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The light different animals can see covers a range from about 300 nm to over 750 nm in wavelength. Shorter than this is middle ultraviolet, which is absorbed by electrons in ordinary components of cells. Longer is infrared, which is associated with vibrations of molecules but not the energy transitions of electrons inside them.
All eyes detect light using proteins called opsins that combine with retinal or derived chromophores. Normally this exists in bent 11-cis form, converted by appropriate wavelengths to the straight all-trans form. This changes the shape of the opsin, which is picked up by transducin proteins that change the membrane potential and create a feedback loop.
The ability to see different colours depends on multiple opsins and is peculiar to two major groups, the arthropods and vertebrates. Some molluscs have very well-developed eyes but apparently only single opsins and so monochromatic vision. A few segmented worms have more than one but it is difficult to tell if they actually see differences from them.
Rod and cone opsins
Vertebrate eyes have visual pigments in four main groups called LWS, Rh, SWS2, and SWS1 in order from long to short wavelengths. In most Rh is also split into Rh1 and Rh2, which goes more with the division of retina cells into rods and cones. (Rh is short for rhodopsin-like from Greek rodon, rose, since they tend to absorb green.)
Rod cells are more sensitive and accurate and so work for low-light vision. In most groups these only have Rh1. Cone cells on the other hand refresh faster and so work for bright-light vision, and usually have the other opsins. When there is more than one type of cone comparison between them allows discrimination of different colours.
Circles = cone pigments
Lines = rod pigments
* = partial sequences
Species | Maximum absorptions | Opsin genes | References | ||||
---|---|---|---|---|---|---|---|
LWS | Rh2 | Rh1 | SWS2 | SWS1 | |||
Jawless fish | |||||||
Geotria australis (southern lampreys) | AY366491 | AY366493
AY366494 |
AY366492 | AY366495 | Collin, Knight, et al. (2003)
Davies, Cowing, et al. (2007) |
||
Petromyzon marinus (northern lampreys) | EU571209 | AH005459 | Davies, Collin, Hunt (2009) | ||||
Eptatretus cirrhatus (hagfish) | KT749668 | Lamb, Patel, et al. (2016) | |||||
Cartilaginous fish | |||||||
Callorhinchus milii (chimaeras) | EF565165
EF565166 |
EF565168 | EF565167 | Davies, Carvalho, et al. (2009) | |||
Chiloscyllium punctatum (bamboo sharks) | MN519165 | MN519144 | Hart, Lamb, et al. (2020) | ||||
Carcharinus melanopterus (requiem sharks) | MN519158 | MN519147 | 〃 | ||||
Aptychotrema vincentiana (banjo rays) | MN519142 | MN519152 | MN519146 | 〃 | |||
Neotrygon kuhlii (stingrays) | MN519164 | MN519153 | MN519143 | 〃 | |||
Ray-finned fish | |||||||
Chitala ornata (featherbacks) | MG584730
(y cones) MG584731 (g cones) |
MG584732 | MG584734 | MG584733 | Liu, Wang, et al. (2019) | ||
Anguilla anguilla (migratory eels) | FJ515778 | L78007*
(juv.) L78008* (adult) |
FJ515779
(adult) |
Archer, Hope, Partridge (1995)
Cottrill, Davies, et al. (2009) |
|||
Sardinops sagax (sardines) | AB731903
(y cones) |
LC007928
LC007929 (g cones) LC007927 (b cones) |
LC007931 | LC007930 | Miyazaki, Kondrashev, Tsuchiya (2018) | ||
Danio rerio (minnows) | AB087804
(central) AB087803 (peripheral) |
AB087805
AB087806 (central) AB087807 AB087808 (peripheral) |
AB087811
(central) HQ286326 (peripheral) |
AB087809 | AB087810 | Allison, Haimberger, et al. (2004)
Takechi & Kawamura (2005) Morrow, Lazic, et al. (2017) |
|
Carassius auratus (carp) | L11867 | L11866
L11865 |
L11863
KY026043* |
L11864 | D85863 | Parry & Bowmaker (2000)
Yokoyama & Yokoyama (2000) Morrow, Lazic, et al. (2017) |
|
Bryconamericus gonzalezi (characins) | MT310726
(y cones) MT310760 MT310761 (g cones) |
MT310787
(b cones) |
MT310799
MT310812 |
MT310777 | Escobar-Camacho, Carleton, et al. (2020) | ||
Oncorhynchus kisutch (salmon) | AY214145
(juv. A1 → adult A2) |
AY214147
(juv. A1 → adult A2) |
AY214146
(juv. A1 → adult A2) |
AY214149
(adult) |
AY214148
(juv.) |
Dann, Allison, et al. (2004)
Flamarique (2005) |
|
Gadus morhua (cod) | AF385824
(life) KJ572530 KJ572531 (juv.) |
AF385832 | AF385822
(life) KJ572532* (juv.) |
Dartnall & Lythgoe (1965)
Valen, Edvardsen, et al. (2014) Valen, Eilertsen, et al. (2016) |
|||
Rhinecanthus aculeatus (triggerfish) | ON060692
(minor) |
ON060694
(g cones) ON060696 ON060697 (b cones) |
ON060693 | ON060701 | Cheney, Hudson, et al. (2022) | ||
Gasterosteus aculeatus (sticklebacks) | KC594699
(A2 fw to A1 marine) |
KC594702
(A2 fw to A1 marine) |
KC774627*
(A2 fw to A1 marine) |
KC774625*
(A2 fw to A1 marine) |
KC774626*
(A2 fw to A1 marine) |
Flamarique, Cheng, et al. (2013)
Shao, Wang, et al. (2014) |
|
Dascyllus trimaculatus (damselfish) | HQ286546
(minor) |
HQ286532
(g cones) HQ286522 (b cones) |
HQ286552 | HQ286512
(minor) |
HQ286502 | Hofmann, Marshall, et al. (2012)
Stieb, Carleton, et al. (2016) |
|
Tramitichromis intermedius (cichlids) | GQ452105
(y cones) |
GQ422498
(g cones) GQ422501 GQ422523 (minor) |
GQ422473 | GQ422526
(b cones) GQ422529 (minor) | GQ422524
(minor) |
Parry, Carleton, et al. (2005)
Hofmann, O'Quin, et al. (2009) |
|
Poecilia reticulata (guppies)
Dots = yg, g cones |
AB748985
(y, yg cones) LC127184 (yg or g?) |
LC127186
(yg or g?) LC127187 (b cones) |
LC127191 | LC127188
(minor) LC127189 (v cones) |
LC127190 | Kawamura, Kasagi, et al. (2016)
Sandkam, Dalton, et al. (2018) |
|
Lobe-finned fish | |||||||
Latimeria chalumnae (coelacanths) | AH007713 | AH007712 | Yokoyama, Zhang, et al. (1999) | ||||
Neoceratodus forsteri (lungfish) | EF526297 | EF526296 | EF526295 | EF526299 | EF526298 (juv.) |
Bailes, Davies, et al. (2007)
Hart, Bailes, et al. (2008) |
|
Amphibians | |||||||
Ambystoma tigrinum (salamanders) | AF038947
(juv. A2 → adult A1) |
U36574
(juv. A2 → adult A1) |
AF038946
(juv. cones, S rods) |
AF038948 | Chen, Ma, et al. (1996)
Xu, Hazard III, et al. (1998) Isayama, Chen, et al. (2014) |
||
Xenopus laevis (clawed frogs) | U90895 | L07770 | AY177405
(S rods) |
U23463 | Rölich & Szél (2000)
Darden, Wu, et al. (2003) |
||
Lithobates sphenocephalus (leopard frogs) | OM243061*
(A2 → A1) |
OM243049*
(A2 → A1) |
OM243084*
(S rods) |
OM243072*
(uncertain) |
Schott, Perez, et al. (2022)
Schott, Bell, et al. (2022) |
||
Mammals | |||||||
Ornithorhynchus anatinus (platypuses) | EF050078 | EF050076 | EF050077 | Davies, Carvalho, et al. (2007) | |||
Loxodonta africana (elephants) | AY686754 | AY686752 | AY686753 | Yokoyama, Takenaka, et al. (2005) | |||
Trichechus manatus (manatees) | AY228447 | AF055319 | AY228443 | Fasick & Robinson (2000)
Newman & Robinson (2006) |
|||
Felis catus (cats) | AF132040 | AJ417432 | BK006813 | Guenther & Zrenner (1993)
Levenson, Ponganis, et al. (2006) Hunt, Carvalho, et al. (2009) |
|||
Phoca vitulina (seals) | AF110495 | AF055317 | Levenson, Ponganis, et al. (2006) | ||||
Globicephala melas (dolphins) | AY228446 | AF055315 | Fasick, Bischoff, et al. (2011) | ||||
Bos taurus (cattle) | AF280398 | M21606 | U92557 | Yokoyama & Yokoyama (2000)
Fasick, Bischoff, et al. (2011) |
|||
Artibeus jamaicensis (bats) | MK209543 | MK209497 | MK209584 | Zhao, Ru, et al. (2009)
Li, Chi, et al. (2018) Simões, Foley, et al. (2018) Sadier, Davies, et al. (2018) |
|||
Homo sapiens (humans) | AH005298
AH005296 |
U49742 | AH003620 | Yokoyama & Yokoyama (2000) | |||
Cavia porcellus (cavies) | AF132042 | EF457995 | AY552608 | Jacobs & Deegan II (1994)
Yokoyama & Radlwimmer (1999) Parry, Poopalasundaram, et al. (2004) Simpanya, Wistow, et al. (2008) |
|||
Rattus norvegicus (rats) | AH006946 | Z46957 | U63972 | Yokoyama & Yokoyama (2000) | |||
Lizards & Snakes | |||||||
Gonatodes annularis (geckos) | KU645244 | KU645217 | KU645270* | Ellingson, Fleishman, Loew (1995)
Cai, Fan, et al. (2021) |
|||
Gekko gecko (geckos) | M92036
(rods) |
M92035
(rods) |
AY024356
(rods) |
Yokoyama & Blow (2001) | |||
Anolis carolinensis (anoles) | U08131 | AH007735 | L31503
(minor) |
AF133907 | AH007736 | Kawamura & Yokoyama (1998)
Yokoyama & Yokoyama (2000) |
|
Xenopeltis unicolor (sunbeam snakes) | FJ497235 | FJ497233 | FJ497234 | Davies, Cowing, et al. (2009) | |||
Agkistrodon contortrix (vipers) | MK494133* | MK494149* | MK494155* | Gower, Sampaio, et al. (2019) | |||
Hydrophis peronii (sea snakes) | MT337800 | MT337837
(cones) |
MT337764* | Hart, Coimbra, et al. (2012)
Simões, Gower, et al. (2020) |
|||
Thamnophis sirtalis (garter snakes) | MH011580 | MH011461
(cones) |
MH011642 | Simões, Sampaio, et al. (2016)
Schott, Van Nynatten, et al. (2018) |
|||
Hypsiglena torquata (night snakes) | MH011576
(rods) |
MH011457 | MH011638
(rods) |
〃 | |||
Arizona elegans (colubrines) |
KU323986
(hybrids) |
KU324006
(hybrids) |
KU323997
(hybrids) |
〃 | |||
Lampropeltis getula (colubrines) | MH011577 | MH011458 | MH011639 | 〃 | |||
Turtles | |||||||
Trachemys scripta (pond turtles) | OP186961* | OP186960* | OP186959* | OP186958* | OP186957* | Corredor, Hauzman, et al. (2022) | |
Birds | |||||||
Dromaius novaehollandiae (emus) | KU568452* | KU568455* | KU568453* | KU56845* | KU56846* | Hart, Mountford, et al. (2016) | |
Gallus gallus (chickens) | M62903 | M92038 | D00702 | M92037 | M92039 | Yokoyama & Yokoyama (2000) | |
Columba livia (pigeons) | AH007800 | AH007731 | AH007730 | AH007799 | AY686753 | Kawamura, Blow, Yokoyama (1999) | |
Grus americana (cranes) | KM508487 | KM508489 | KM508488 | KM508491 | KM508490 | Porter, Kingston, et al. (2014) | |
Platycercus elegans (parrots) | KF134493 | KF134489* | KF134487* | KF134491* | KF134492 | Knott, Davies, et al. (2013) | |
Ptilonorhynchus violaceus (bowerbirds) | JQ034371* | JQ034377* | JQ034383* | JQ034388* | HM773352* | Zwiers (2009) dissert.
Coyle, Hart, et al. (2012) |
|
Taeniopygia guttata (finches) | AF222333 | AF222330 | AF222329 | AF222332 | AF222331 | Yokoyama, Radlwimmer, Blow (2000)
Yokoyama, Blow, Radlwimmer (2000) |
Arachnid & crustacean opsins
Arthropods have two main types of eyes, lateral and median, as well as additional larval eyes in horseshoe crabs. Ancestrally the lateral eyes are compound and the others are simple light sensors or ocelli. However, sometimes the lateral eyes are broken up or lost and the median eyes are the principal ones, for instance in arachnid groups like spiders.
The visual pigments here come in five main groups named LWS1, LWS2, MWS1, MWS2, and SWS, with the first again specific to horseshoe crabs, and often include multiple variants. However in classes other than insects there are relatively few cases where the opsins have actually been related to different wavelengths.
There is also not much indication that these classes compare different pigments. Mantis shrimp eyes have a special midband with about a dozen combinations of opsins to detect colour, but only distinguish wavelengths to 15 nm or so. These then act for quick recognition of different ranges rather than being contrasted to determine finer shades.
M = maximum absorptions for visual pigments
S = spectral sensitivities, i.e. with screening effects
Circles = lateral eyes
Dots = median eyes (where reported)
Species | Maximum absorptions | Opsin genes | References | ||||
---|---|---|---|---|---|---|---|
LWS1 | LWS2 | MWS1 | MWS2 | SWS | |||
Arachnids & allies | |||||||
S: Limulus polyphemus (horseshoe crabs) | KM538950
KM538951 (median) |
L03781-82
AY190512* AY190514* (lat., larval) KM538952 (median) |
FJ791252
(lat., larval) |
JN210564
(all eyes) |
Nolte & Brown (1970)
Dalal, Jinks, et al. (2003) Battelle, Kempler, et al. (2015) Henze & Oakley (2015) |
||
S: Cupiennius salei (spiders) | HF549177
HF549178 |
HF549179
(lateral) |
Zopf, Schmid, et al. (2013) | ||||
Ostracoda | |||||||
S: Skogsbergia lerneri (cypridinids) | AF353364*
(lateral) AF353346* (median) & sim. |
Oakley & Huber (2004) | |||||
Malacostraca | |||||||
M: Neogonodactylus oerstedtii (mantis shrimp)
Lines = cells in midband rows of eye Joined = layers in same row |
MT112859
MT112878-86 MT112880* MT112888* |
MT112862-63
MT112866-67 MT112869-70 |
MT112860*
MT112864 MT112868 MT112887 |
KJ127520*
KJ127521* |
Cronin & Marshall (1989)
Bok, Porter, et al. (2014) Porter, Awata, et al. (2020) |
||
S: Procambarus clarkii (crayfish) | KT304796
(A2 winter ↔ A1 summer) |
KT304797 | Zeiger & Goldsmith (1993)
Kingston & Cronin (2015) |
||||
S: Hemigrapsus sanguineus (shore crabs) | D50583
D50584 |
Sakomoto, Hisatomi, et al. (1996) | |||||
M: Mysis diluviana (opossum shrimp) | DQ852591*
(A2 to A1) |
Jokela-Määttä, Pahlberg, et al. (2005)
Porter, Cronin, et al. (2007) |
|||||
Branchiopoda | |||||||
M: Triops longicaudatus (tadpole shrimp) | AB293434
AB298800* AB298801* |
AB293433 | AB293435 | Kashiyama, Seki, et al. (2009)
Lessios, Rutowski, et al. (2018) Palecanda, Iwanicki, et al. (2022) |
Insect opsins
Insects have lost the crustacean MWS opsins but instead have double copies of the others, called LWS2a, LWS2b, SWS, and UVS in order from longer to shorter wavelengths. When present LWS2b is often associated with ocelli while the others generally give colour discrimination in the compound eyes, sometimes with further duplications or losses.
Species | Maximum absorptions | Opsin genes | References | |||
---|---|---|---|---|---|---|
LWS2a | LWS2b | SWS | UVS | |||
Various orders | ||||||
S: Periplaneta americana (cockroaches) | KP861985 | KP981367 | KP941115 | French, Meisner, et al. (2015) | ||
S: Gryllus bimaculatus (crickets) | HM363621
(compound) |
HM363620
(ocelli) |
HM363622
(compound) |
HM363623
(compound) (? in ocelli) |
Henze, Dannenhauer, et al. (2012) | |
S: Nephotettix cincticeps (leafhoppers) | AB761156 | AB761157 | AB761158 | Wakakuwa, Stewart, et al. (2014) | ||
S: Apis mellifera (bees) | BK005514
(compound) | BK005515
(ocelli) |
BK005512
(compound) |
BK005513
(all eyes) |
Velarde, Sauer, et al. (2005) | |
M: Drosophila melanogaster (flies) | Z86118
(compound: y units) |
K02315
(y+p units) M12896 (ocelli) |
U67905
(compound: p units) |
AH001040
(y units) M17718 (p units) |
Salcedo, Huber, et al. (1999)
Yokoyama & Yokoyama (2000) |
|
Moths & Butterflies | ||||||
M: Papilio xuthus (swallowtails)
Line = extra receptor from filters |
AB007425
(r units) AB007423 AB007424 (r+y units) |
AB028217*
(non-fluor. r+y units) |
AB028218*
(r units) |
Arikawa, Inokuma, Eguchi (1987)
Kitamoto, Ozaki, Arikawa (2000) Arikawa, Mizuno, et al. (2003) | ||
M: Vanessa cardui (nymphalid butterflies) | AF385333 | AF414075 | AF414074 | Briscoe, Bernard, et al. (2003) | ||
M: Heliconius erato (nymphalid butterflies)
Line = extra receptor from filters |
AY918907 | AY918906 | AY918905
(all) AY918904 (females) |
Zaccardi, Kelber, et al. (2006)
Briscoe, Bybee, et al. (2010) McCullough, Osorio, Briscoe (2016) |
||
M: Tharsalea rubidus (lycaenid butterflies) | AY587901 | AY587903
AY587902 |
AY587904 | Sison-Mangus, Bernard, et al. (2006) | ||
M: Manduca sexta (hawk moths) | L78080 | AD001674 | L78081 | Chase, Bennett, White (1997) | ||
Beetles | ||||||
M: Chrysochroa rajah (jewel beetles) | OP722947
OP722948 |
OP722930
OP722931 |
Sharkey, Blanco, et al. (2023) | |||
M: Photinus pyralis (fireflies) | KR150960 | KR150972 | Cronin, Järvilehto, et al. (2000)
Martin, Lord, et al. (2015) |
|||
S: Protaetia brevitarsis (scarabs) | MW886063 | MW886062 | Lin & Wu (1992)
Sharkey, Powell, Bybee (2021) |
|||
S: Coccinella septempunctata (ladybugs) | KY368274 | KY368276
KY368275 |
Lin (1993)
Sharkey, Fujimoto, et al. (2017) |
|||
S: Leptinotarsa decemlineata (leaf beetles) | KY368312 | KY368310
KY368311 |
Döring & Skorupski (2007)
Sharkey, Fujimoto, et al. (2017) |
The following gives more complete versions of the references from the table. The opsin genes are all listed by accession number from GenBank. I have kept to examples where there are at least partial sequences, marked by asterisks, but for those interested Longcore has a repository including spectral sensitivities for some other terrestrial species.